When you try to import an orchestration assembly to perform a redeployment in BizTalk Server Administration Console on BizTalk Server, the assembly may unexpectedly change the pipelines in ports that the orchestration is bound to.
Cumulative update information
This issue was first fixed in the following cumulative update of BizTalk Server:
Microsoft has confirmed that this is a problem in the Microsoft products that are listed in the "Applies to" section.
For information about the service packs and cumulative update list for BizTalk Server, see KB 2555976: Service pack and cumulative update list for BizTalk Server.
For more information about BizTalk Server hotfixes, see KB 2003907: Information about BizTalk hotfixes and cumulative update support.