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You create a new custom template (.stp) file to contain only the information and items that you want to be available for new sites and lists in a Microsoft Windows SharePoint Services 3.0 site collection. When you use the custom .stp template file to create a new page, the standard Web Parts are not available. Only the Web Parts that you added to the custom .stp template file are available.
To resolve this problem, apply hotfix 941422. This problem is fixed for custom .stp template files that are created from a site collection that is provisioned after hotfix 941422 is applied.
How to obtain the hotfix
This issue is fixed in the Windows SharePoint Services 3.0 post-Service Pack 1 Hotfix Package that is dated January 31, 2008. For more information, click the following article number to view the article in the Microsoft Knowledge Base:
941422 Description of the Windows SharePoint Services 3.0 post-Service Pack 1 hotfix package: January 31, 2008
Microsoft has confirmed that this is a problem in the Microsoft products that are listed in the "Applies to" section.