When you call a Microsoft SQL Server 2016 Integration Services (SSIS 2016) package from an executable file that's outside the %Program Files%\Microsoft SQL Server\130\DTS\Binn folder, the SSIS package doesn't run. Additionally, you receive a misleading "FileNotFound" exception.
Cumulative Update information
The issue was first fixed in the following cumulative update of SQL Server.
Each new cumulative update for SQL Server contains all the hotfixes and all the security fixes that were included with the previous cumulative update. We recommend that you download and install the latest cumulative updates for SQL Server:
Microsoft has confirmed that this is a problem in the Microsoft products that are listed in the "Applies to" section.