Symptoms
Consider the following scenario:
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You have a BizTalk application in Microsoft BizTalk Server 2010 or in Microsoft BizTalk Server 2013.
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There are multiple orchestrations that use the same receive location in the application. Additionally, the orchestrations are in multiple assemblies that refer to another common assembly.
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You set the receive locations to use the XMLReceive pipeline or a custom receive pipeline.
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You update the common assembly.
In this scenario, the receive locations are reset to use PassThruReceive pipeline.
Note The XMLReceive pipeline and the PassThruReceive pipeline are the default receive pipelines included in BizTalk Server.Resolution
Cumulative update information
For BizTalk Server 2013
The hotfix that resolves this issue is included in cumulative update package 2 for BizTalk Server 2013.
For more information about how to obtain the cumulative update package, click the following article number to view the article in the Microsoft Knowledge Base:2892599 Cumulative update package 2 for BizTalk Server 2013
For BizTalk Server 2010
The hotfix that resolves this issue is included in cumulative update package 6 for BizTalk Server 2010.
For more information about how to obtain the cumulative update package, click the following article number to view the article in the Microsoft Knowledge Base:2855367 Cumulative update package 6 for BizTalk Server 2010
Status
Microsoft has confirmed that this is a problem in the Microsoft products that are listed in the "Applies to" section.